Alexa-Seq - Alternative Expression Analysis By RNA Sequencing | Tool name | Alexa-Seq - Alternative Expression Analysis By RNA Sequencing |
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| URL | http://www.alexaplatform.org/alexa_seq/index.htm |
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| Important features | |
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| Citations | Griffith M, Griffith OL, Mwenifumbo J, Goya R, Morrissy AS, Morin RD, Corbett
R, Tang MJ, Hou YC, Pugh TJ, Robertson G, Chittaranjan S, Ally A, Asano JK, Chan
SY, Li HI, McDonald H, Teague K, Zhao Y, Zeng T, Delaney A, Hirst M, Morin GB,
Jones SJ, Tai IT, Marra MA. Alternative expression analysis by RNA sequencing.
Nat Methods. 2010 Oct;7(10):843-7. Epub 2010 Sep 12. PubMed PMID: 20835245.
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | 1) ALEXA-Seq annotation databases for eight species, raw data, source code, etc. can be downloaded. 2) Gene information includes chromosome number, start, end, strand, size and type of gene. |
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| Function | Exon detail, Exon detail: number, Exon detail direct information, Expression information, Gene Information, Number of transcripts |
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| Category | |
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| Input file format | Hugo name, Entrez name, Ensembl ID, project ID |
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| Output file format | |
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| Limitation | |
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